STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD08830.1Capsular exopolysaccharide family. (232 aa)    
Predicted Functional Partners:
SDD08865.1
Capsular polysaccharide biosynthesis protein.
 
 0.999
SDC88652.1
Protein-tyrosine phosphatase.
  
 0.983
SDD08791.1
Polysaccharide biosynthesis protein; NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
 
 
 0.917
SDD08753.1
O-antigen biosynthesis protein WbqP.
 
 
 0.902
SDD40316.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
 
 0.793
pknB
Serine/threonine protein kinase.
    
 
 0.700
cysE
Serine O-acetyltransferase.
  
 
 0.679
SDD40355.1
UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing).
  
 
 0.657
SDD08619.1
UDP-N-acetyl-D-galactosamine dehydrogenase.
    
 0.651
guaA
GMP synthase (glutamine-hydrolysing).
   
 
 0.617
Your Current Organism:
Marinilactibacillus psychrotolerans
NCBI taxonomy Id: 191770
Other names: DSM 19582, IAM 14980, JCM 21451, M. psychrotolerans, Marinilactibacillus psychrotolerans Ishikawa et al. 2003, Marinolactobacillus psychrotolerans, NBRC 100002, NCIMB 13873, NRIC 0510, strain M13-2
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