STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD11398.1DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. (778 aa)    
Predicted Functional Partners:
SDC08121.1
Parallel beta-helix repeat (two copies).
   
 
 0.940
SDB98880.1
Cell division protein FtsQ.
   
 
 0.816
SDC77720.1
Chromosome partitioning protein, ParB family.
  
  
 0.788
polA
DNA polymerase I.
 
  
 0.785
SDB96141.1
Competence protein ComEC.
 
  
 0.757
topA
DNA topoisomerase-1.
 
   
 0.732
racE
Glutamate racemase.
    
 0.700
SDB97221.1
Putative ATPase.
  
 0.692
recJ
single-stranded-DNA-specific exonuclease.
 
  
 0.650
SDC98593.1
Ammonium transporter, Amt family.
     
 0.629
Your Current Organism:
Marinilactibacillus psychrotolerans
NCBI taxonomy Id: 191770
Other names: DSM 19582, IAM 14980, JCM 21451, M. psychrotolerans, Marinilactibacillus psychrotolerans Ishikawa et al. 2003, Marinolactobacillus psychrotolerans, NBRC 100002, NCIMB 13873, NRIC 0510, strain M13-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.