STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aroA3-phosphoshikimate 1-carboxyvinyltransferase. (415 aa)    
Predicted Functional Partners:
aroB
3-dehydroquinate synthase.
 
 0.999
aroC
Chorismate synthase.
 
 0.999
aroE
Shikimate dehydrogenase.
 
 0.997
SDC56103.1
Shikimate kinase.
 
 
 0.995
SDC56021.1
Prephenate dehydrogenase.
 
 0.991
SDD15993.1
Chorismate mutase.
 
 
 0.989
SDC59280.1
Cytidylate kinase.
 
 
 0.952
aroF
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
 
  
 0.936
SDD15770.1
Hypothetical protein.
 
  
 0.916
maa
Maltose O-acetyltransferase.
  
 
 0.866
Your Current Organism:
Marinilactibacillus psychrotolerans
NCBI taxonomy Id: 191770
Other names: DSM 19582, IAM 14980, JCM 21451, M. psychrotolerans, Marinilactibacillus psychrotolerans Ishikawa et al. 2003, Marinolactobacillus psychrotolerans, NBRC 100002, NCIMB 13873, NRIC 0510, strain M13-2
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