STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoNRNA polymerase, sigma 54 subunit, RpoN/SigL. (427 aa)    
Predicted Functional Partners:
SDC76989.1
Transcriptional regulatory protein LevR, contains PRD, AAA+ and EIIA domains.
 
 
 
 0.972
SDD02323.1
Transcriptional regulator containing an AAA-type ATPase domain and a DNA-binding domain.
 
 
 
 0.972
SDD21503.1
Transcriptional regulatory protein LevR, contains PRD, AAA+ and EIIA domains.
 
 
 
 0.972
SDD42630.1
PRD domain-containing protein.
 
 
 
 0.962
SDC43630.1
DNA-directed RNA polymerase subunit alpha.
  
 
 0.955
rpoC
DNA-directed RNA polymerase subunit beta'.
  
 
 
 0.954
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.948
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
 
 0.937
lepB
Signal peptidase I.
  
  
 0.900
SDC99919.1
Hypothetical protein.
  
 
 0.702
Your Current Organism:
Marinilactibacillus psychrotolerans
NCBI taxonomy Id: 191770
Other names: DSM 19582, IAM 14980, JCM 21451, M. psychrotolerans, Marinilactibacillus psychrotolerans Ishikawa et al. 2003, Marinolactobacillus psychrotolerans, NBRC 100002, NCIMB 13873, NRIC 0510, strain M13-2
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