STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nifQ1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa)    
Predicted Functional Partners:
AIB12360.1
Aminotransferase class V; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.972
nifS
Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
 
 0.956
iscS
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.949
AIB12312.1
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.949
AIB12436.1
Catalyzes the reduction of trimethylamine-N-oxide to form trimethylamine; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.949
AIB12272.1
2Fe-2S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.931
AIB10978.1
Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.925
AIB12273.1
Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.925
nifN
Nitrogenase molybdenum-cofactor biosynthesis protein NifN; Functions with NifE to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.925
fdxB
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.925
Your Current Organism:
Azospirillum brasilense
NCBI taxonomy Id: 192
Other names: A. brasilense, ATCC 29145, Azospirillum brasiliense, LMG 13127, LMG:13127, NBRC 102289, NRRL B-14647, Roseomonas fauriae, Spirillum lipoferum, bacterium ASAZOES-148, strain sp. 7
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