APO85596.1 protein (Marivivens sp. JLT3646) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

APO85596.1

4-hydroxy-tetrahydrodipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)

Predicted Functional Partners:

APO85573.1

0.999

APO87095.1

0.990

APO87853.1

0.990

APO87358.1

0.957

APO85917.1

0.932

APO87951.1

0.843

APO87638.1

0.833

APO88250.1

0.769

APO86416.1

0.758

APO86016.1

0.751

Your Current Organism:

Marivivens sp. JLT3646

NCBI taxonomy Id: 1920883
Other names: M. sp. JLT3646, Marivivens sp. CGMCC 1.15778

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APO85573.1	APO85596.1	BSK21_00105	BSK21_00235	4-hydroxy-tetrahydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxy-tetrahydrodipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APO85573.1	APO85917.1	BSK21_00105	BSK21_01990	4-hydroxy-tetrahydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diaminopimelate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.890
APO85573.1	APO87095.1	BSK21_00105	BSK21_08645	4-hydroxy-tetrahydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.776
APO85573.1	APO87358.1	BSK21_00105	BSK21_10085	4-hydroxy-tetrahydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.688
APO85573.1	APO87638.1	BSK21_00105	BSK21_11720	4-hydroxy-tetrahydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
APO85573.1	APO87853.1	BSK21_00105	BSK21_13000	4-hydroxy-tetrahydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
APO85573.1	APO87951.1	BSK21_00105	BSK21_13560	4-hydroxy-tetrahydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diaminopimelate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.690
APO85596.1	APO85573.1	BSK21_00235	BSK21_00105	4-hydroxy-tetrahydrodipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxy-tetrahydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APO85596.1	APO85917.1	BSK21_00235	BSK21_01990	4-hydroxy-tetrahydrodipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diaminopimelate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
APO85596.1	APO86016.1	BSK21_00235	BSK21_02545	4-hydroxy-tetrahydrodipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.751
APO85596.1	APO86416.1	BSK21_00235	BSK21_04770	4-hydroxy-tetrahydrodipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MBL fold hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.758
APO85596.1	APO87095.1	BSK21_00235	BSK21_08645	4-hydroxy-tetrahydrodipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
APO85596.1	APO87358.1	BSK21_00235	BSK21_10085	4-hydroxy-tetrahydrodipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957
APO85596.1	APO87638.1	BSK21_00235	BSK21_11720	4-hydroxy-tetrahydrodipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.833
APO85596.1	APO87853.1	BSK21_00235	BSK21_13000	4-hydroxy-tetrahydrodipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
APO85596.1	APO87951.1	BSK21_00235	BSK21_13560	4-hydroxy-tetrahydrodipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diaminopimelate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843
APO85596.1	APO88250.1	BSK21_00235	BSK21_03400	4-hydroxy-tetrahydrodipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
APO85917.1	APO85573.1	BSK21_01990	BSK21_00105	Diaminopimelate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxy-tetrahydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.890
APO85917.1	APO85596.1	BSK21_01990	BSK21_00235	Diaminopimelate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxy-tetrahydrodipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
APO85917.1	APO87095.1	BSK21_01990	BSK21_08645	Diaminopimelate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.624