STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APO86011.1tRNA (guanosine(37)-N1)-methyltransferase TrmD; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)    
Predicted Functional Partners:
APO86009.1
50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.996
APO86013.1
16S rRNA processing protein RimM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.994
APO86015.1
30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.993
APO87463.1
30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.946
APO86721.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.944
APO85774.1
30S ribosomal protein S10; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.941
APO86943.1
30S ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.935
APO85772.1
Translation elongation factor G; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.933
APO85775.1
50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.932
APO88215.1
Preprotein translocase subunit SecY; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.931
Your Current Organism:
Marivivens sp. JLT3646
NCBI taxonomy Id: 1920883
Other names: M. sp. JLT3646, Marivivens sp. CGMCC 1.15778
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.