APO86072.1 protein (Marivivens sp. JLT3646) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

APO86072.1

Histidine triad nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)

Predicted Functional Partners:

APO86071.1

0.863

APO86073.1

0.773

APO86070.1

0.715

APO85767.1

0.466

APO86069.1

0.460

APO85725.1

0.432

APO85623.1

0.427

APO88050.1

0.418

APO85766.1

0.412

APO85797.1

0.404

Your Current Organism:

Marivivens sp. JLT3646

NCBI taxonomy Id: 1920883
Other names: M. sp. JLT3646, Marivivens sp. CGMCC 1.15778

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APO85623.1	APO85797.1	BSK21_00390	BSK21_01320	Peptide deformylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S13; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.670
APO85623.1	APO86072.1	BSK21_00390	BSK21_02860	Peptide deformylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine triad nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
APO85725.1	APO85766.1	BSK21_00945	BSK21_01155	DNA-directed RNA polymerase subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
APO85725.1	APO85767.1	BSK21_00945	BSK21_01160	DNA-directed RNA polymerase subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
APO85725.1	APO85797.1	BSK21_00945	BSK21_01320	DNA-directed RNA polymerase subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S13; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
APO85725.1	APO86072.1	BSK21_00945	BSK21_02860	DNA-directed RNA polymerase subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine triad nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
APO85766.1	APO85725.1	BSK21_01155	BSK21_00945	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
APO85766.1	APO85767.1	BSK21_01155	BSK21_01160	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APO85766.1	APO85797.1	BSK21_01155	BSK21_01320	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S13; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
APO85766.1	APO86072.1	BSK21_01155	BSK21_02860	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine triad nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
APO85767.1	APO85725.1	BSK21_01160	BSK21_00945	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
APO85767.1	APO85766.1	BSK21_01160	BSK21_01155	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APO85767.1	APO85797.1	BSK21_01160	BSK21_01320	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S13; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
APO85767.1	APO86072.1	BSK21_01160	BSK21_02860	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine triad nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
APO85797.1	APO85623.1	BSK21_01320	BSK21_00390	30S ribosomal protein S13; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide deformylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.670
APO85797.1	APO85725.1	BSK21_01320	BSK21_00945	30S ribosomal protein S13; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
APO85797.1	APO85766.1	BSK21_01320	BSK21_01155	30S ribosomal protein S13; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
APO85797.1	APO85767.1	BSK21_01320	BSK21_01160	30S ribosomal protein S13; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
APO85797.1	APO86072.1	BSK21_01320	BSK21_02860	30S ribosomal protein S13; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine triad nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
APO86069.1	APO86070.1	BSK21_02845	BSK21_02850	O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541