APO86797.1 protein (Marivivens sp. JLT3646) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

APO86797.1

UMP kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)

Predicted Functional Partners:

APO86796.1

0.997

APO86281.1

0.996

APO87785.1

0.995

APO86497.1

0.993

APO86691.1

0.989

APO86690.1

0.977

APO86795.1

0.950

APO86429.1

0.947

APO86794.1

0.942

APO86859.1

0.909

Your Current Organism:

Marivivens sp. JLT3646

NCBI taxonomy Id: 1920883
Other names: M. sp. JLT3646, Marivivens sp. CGMCC 1.15778

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APO86281.1	APO86429.1	BSK21_04025	BSK21_04840	Uracil phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	5'/3'-nucleotidase SurE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
APO86281.1	APO86690.1	BSK21_04025	BSK21_06420	Uracil phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.612
APO86281.1	APO86691.1	BSK21_04025	BSK21_06425	Uracil phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Translation elongation factor Ts; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538
APO86281.1	APO86797.1	BSK21_04025	BSK21_07005	Uracil phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	UMP kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
APO86281.1	APO87785.1	BSK21_04025	BSK21_12595	Uracil phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Orotidine 5'-phosphate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
APO86429.1	APO86281.1	BSK21_04840	BSK21_04025	5'/3'-nucleotidase SurE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uracil phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
APO86429.1	APO86797.1	BSK21_04840	BSK21_07005	5'/3'-nucleotidase SurE; Derived by automated computational analysis using gene prediction method: Protein Homology.	UMP kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
APO86429.1	APO87785.1	BSK21_04840	BSK21_12595	5'/3'-nucleotidase SurE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Orotidine 5'-phosphate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
APO86497.1	APO86690.1	BSK21_05200	BSK21_06420	Nucleoside-diphosphate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
APO86497.1	APO86691.1	BSK21_05200	BSK21_06425	Nucleoside-diphosphate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Translation elongation factor Ts; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.542
APO86497.1	APO86796.1	BSK21_05200	BSK21_07000	Nucleoside-diphosphate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosome recycling factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.711
APO86497.1	APO86797.1	BSK21_05200	BSK21_07005	Nucleoside-diphosphate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	UMP kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
APO86497.1	APO86859.1	BSK21_05200	BSK21_07355	Nucleoside-diphosphate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
APO86690.1	APO86281.1	BSK21_06420	BSK21_04025	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uracil phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.612
APO86690.1	APO86497.1	BSK21_06420	BSK21_05200	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nucleoside-diphosphate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
APO86690.1	APO86691.1	BSK21_06420	BSK21_06425	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Translation elongation factor Ts; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
APO86690.1	APO86795.1	BSK21_06420	BSK21_06995	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Di-trans,poly-cis-decaprenylcistransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.562
APO86690.1	APO86796.1	BSK21_06420	BSK21_07000	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosome recycling factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
APO86690.1	APO86797.1	BSK21_06420	BSK21_07005	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	UMP kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
APO86691.1	APO86281.1	BSK21_06425	BSK21_04025	Translation elongation factor Ts; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uracil phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538