STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGT31940.1MFS transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the major facilitator superfamily. (555 aa)    
Predicted Functional Partners:
AGT31939.1
Multidrug effluc protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.936
AGT31938.1
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.837
AGT31941.1
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.523
AGT33251.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.494
AGT30778.1
Major facilitator transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.489
AGT30937.1
Cytochrome D ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
   
 0.484
AGT32023.1
GABA permease (4-amino butyrate transport carrier); Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
   
 0.456
Your Current Organism:
Geobacillus genomosp.
NCBI taxonomy Id: 1921421
Other names: Bacillus sp. JF8, G. genomosp. 3, Geobacillus genomosp. 3, Geobacillus genomospecies 3, Geobacillus sp. JF8
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