API58272.1 protein (Tardibacter chloracetimidivorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

API58272.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)

Predicted Functional Partners:

API58271.1

0.732

API58273.1

0.576

API58274.1

0.576

API58275.1

0.576

API58276.1

0.576

API58269.1

0.497

API58270.1

0.497

Your Current Organism:

Tardibacter chloracetimidivorans

NCBI taxonomy Id: 1921510
Other names: JJ-A5, KACC 19450, NBRC 113160, Sphingomonas sp. JJ-A5, T. chloracetimidivorans

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
API58269.1	API58270.1	BSL82_02250	BSL82_02255	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
API58269.1	API58271.1	BSL82_02250	BSL82_02260	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.522
API58269.1	API58272.1	BSL82_02250	BSL82_02265	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
API58270.1	API58269.1	BSL82_02255	BSL82_02250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
API58270.1	API58271.1	BSL82_02255	BSL82_02260	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.522
API58270.1	API58272.1	BSL82_02255	BSL82_02265	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
API58270.1	API58273.1	BSL82_02255	BSL82_02270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.499
API58270.1	API58275.1	BSL82_02255	BSL82_02280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
API58271.1	API58269.1	BSL82_02260	BSL82_02250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.522
API58271.1	API58270.1	BSL82_02260	BSL82_02255	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.522
API58271.1	API58272.1	BSL82_02260	BSL82_02265	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.732
API58271.1	API58273.1	BSL82_02260	BSL82_02270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.547
API58271.1	API58274.1	BSL82_02260	BSL82_02275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.547
API58271.1	API58275.1	BSL82_02260	BSL82_02280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547
API58271.1	API58276.1	BSL82_02260	BSL82_02285	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547
API58272.1	API58269.1	BSL82_02265	BSL82_02250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.497
API58272.1	API58270.1	BSL82_02265	BSL82_02255	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
API58272.1	API58271.1	BSL82_02265	BSL82_02260	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.732
API58272.1	API58273.1	BSL82_02265	BSL82_02270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.576
API58272.1	API58274.1	BSL82_02265	BSL82_02275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.576

page 1 of 3

Network Stats

number of nodes:

10

number of edges:

29

average node degree:

5.8

avg. local clustering coefficient:

0.817

expected number of edges:

23

PPI enrichment p-value:

0.121

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0016226

Iron-sulfur cluster assembly

5 of 16

2.07

2.85

1.11e-06

GO:0006790

Sulfur compound metabolic process

6 of 101

1.35

1.49

4.36e-05

GO:0044571

[2Fe-2S] cluster assembly

2 of 2

2.58

1.15

0.0079

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:4681

Mixed, incl. Iron-sulfur cluster assembly, and Cysteine desulfurase activity

8 of 24

2.1

5.16

6.55e-13

CL:4685

Cysteine desulfurase activity, and SUF system FeS cluster assembly, SufBD

5 of 11

2.23

3.56

5.42e-08

CL:4689

SUF system FeS cluster assembly, SufBD, and Cysteine desulfurase

4 of 5

2.48

3.27

5.60e-07

CL:2850

tRNA thio-modification, and [2Fe-2S] cluster assembly

2 of 6

2.1

0.86

0.0248

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map04122

Sulfur relay system

3 of 38

1.47

0.82

0.0178

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:1990229

Iron-sulfur cluster assembly complex

2 of 2

2.58

1.08

0.0109

GOCC:0009536

Plastid

3 of 26

1.64

0.95

0.0109

GOCC:0005654

Nucleoplasm

2 of 9

1.92

0.89

0.0197

GOCC:0005759

Mitochondrial matrix

2 of 11

1.84

0.85

0.0232

GOCC:0043231

Intracellular membrane-bounded organelle

5 of 231

0.91

0.57

0.0187

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00266

Aminotransferase class-V

3 of 14

1.91

1.16

0.0055

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR000192

Aminotransferase class V domain

3 of 12

1.97

1.06

0.0094

IPR045595

SUF system FeS cluster assembly, SufBD, N-terminal

2 of 2

2.58

0.85

0.0290

IPR037284

SUF system FeS cluster assembly, SufBD superfamily

2 of 2

2.58

0.85

0.0290

IPR000825

SUF system FeS cluster assembly, SufBD

2 of 2

2.58

0.85

0.0290

IPR016454

Cysteine desulfurase

2 of 3

2.4

0.84

0.0290

(more ...)

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