API60162.1 protein (Tardibacter chloracetimidivorans)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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protein homology

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[Homology]

Score

API60162.1

DUF159 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SOS response-associated peptidase family. (203 aa)

Predicted Functional Partners:

API60161.1

0.782

API61155.1

0.577

API61154.1

0.485

API59887.1

0.478

API58118.1

0.447

API58386.1

0.439

API58117.1

0.437

Your Current Organism:

Tardibacter chloracetimidivorans

NCBI taxonomy Id: 1921510
Other names: JJ-A5, KACC 19450, NBRC 113160, Sphingomonas sp. JJ-A5, T. chloracetimidivorans

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
API58117.1	API58118.1	BSL82_01385	BSL82_01390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
API58117.1	API60162.1	BSL82_01385	BSL82_13355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	DUF159 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SOS response-associated peptidase family.	0.437
API58118.1	API58117.1	BSL82_01390	BSL82_01385	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.785
API58118.1	API59887.1	BSL82_01390	BSL82_11665	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	long-chain-fatty-acyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
API58118.1	API60162.1	BSL82_01390	BSL82_13355	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DUF159 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SOS response-associated peptidase family.	0.447
API58118.1	API61154.1	BSL82_01390	BSL82_13345	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein ImuA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
API58386.1	API59887.1	BSL82_02920	BSL82_11665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	long-chain-fatty-acyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
API58386.1	API60162.1	BSL82_02920	BSL82_13355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DUF159 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SOS response-associated peptidase family.	0.439
API59887.1	API58118.1	BSL82_11665	BSL82_01390	long-chain-fatty-acyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
API59887.1	API58386.1	BSL82_11665	BSL82_02920	long-chain-fatty-acyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
API59887.1	API60162.1	BSL82_11665	BSL82_13355	long-chain-fatty-acyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DUF159 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SOS response-associated peptidase family.	0.478
API60161.1	API60162.1	BSL82_13350	BSL82_13355	Calpastatin; Derived by automated computational analysis using gene prediction method: Protein Homology.	DUF159 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SOS response-associated peptidase family.	0.782
API60161.1	API61154.1	BSL82_13350	BSL82_13345	Calpastatin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein ImuA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
API60161.1	API61155.1	BSL82_13350	BSL82_13360	Calpastatin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
API60162.1	API58117.1	BSL82_13355	BSL82_01385	DUF159 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SOS response-associated peptidase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.437
API60162.1	API58118.1	BSL82_13355	BSL82_01390	DUF159 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SOS response-associated peptidase family.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
API60162.1	API58386.1	BSL82_13355	BSL82_02920	DUF159 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SOS response-associated peptidase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
API60162.1	API59887.1	BSL82_13355	BSL82_11665	DUF159 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SOS response-associated peptidase family.	long-chain-fatty-acyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
API60162.1	API60161.1	BSL82_13355	BSL82_13350	DUF159 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SOS response-associated peptidase family.	Calpastatin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
API60162.1	API61154.1	BSL82_13355	BSL82_13345	DUF159 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SOS response-associated peptidase family.	Protein ImuA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.485

page 1 of 2

Network Stats

number of nodes:

11

number of edges:

55

average node degree:

10

avg. local clustering coefficient:

1

expected number of edges:

27

PPI enrichment p-value:

8.8e-07

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0010133

Proline catabolic process to glutamate

4 of 5

2.35

2.57

1.13e-05

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0016620

Oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

5 of 8

2.24

3.39

1.37e-07

GO:0016491

Oxidoreductase activity

6 of 250

0.82

0.52

0.0180

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:4299

Mixed, incl. LUD domain, and Cysteine-rich domain

5 of 15

1.97

2.64

2.10e-06

CL:1273

Proline catabolic process

3 of 5

2.22

1.91

0.00021

CL:4301

Mixed, incl. Acyl-CoA reductase (LuxC), and NUDIX domain

3 of 6

2.14

1.83

0.00028

CL:4294

Mixed, incl. Phenylalanine metabolism, and Protein of unknown function DUF2911

6 of 77

1.34

1.47

4.30e-05

CL:1061

Mixed, incl. Carbon metabolism, and Cellular amino acid metabolic process

5 of 180

0.89

0.57

0.0159

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00360

Phenylalanine metabolism

4 of 29

1.58

0.00019

map01120

Microbial metabolism in diverse environments

7 of 161

1.08

1.12

3.95e-05

map01100

Metabolic pathways

9 of 937

0.43

0.3

0.0261

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00171

Aldehyde dehydrogenase family

4 of 4

2.44

2.93

2.56e-06

PF05893

Acyl-CoA reductase (LuxC)

2 of 2

2.44

1.01

0.0143

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR016161

Aldehyde/histidinol dehydrogenase

6 of 6

2.44

4.72

3.97e-10

IPR016163

Aldehyde dehydrogenase, C-terminal

5 of 5

2.44

3.87

2.76e-08

IPR016162

Aldehyde dehydrogenase, N-terminal

5 of 5

2.44

3.87

2.76e-08

IPR015590

Aldehyde dehydrogenase domain

5 of 5

2.44

3.87

2.76e-08

IPR029510

Aldehyde dehydrogenase, glutamic acid active site

3 of 3

2.44

2.04

0.00015

(more ...)

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