API60545.1 protein (Tardibacter chloracetimidivorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

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[Homology]

Score

API60545.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (133 aa)

Predicted Functional Partners:

API60543.1

0.768

API60544.1

0.768

API60546.1

0.671

API60539.1

0.606

API60540.1

0.606

API60541.1

0.606

API60542.1

0.606

Your Current Organism:

Tardibacter chloracetimidivorans

NCBI taxonomy Id: 1921510
Other names: JJ-A5, KACC 19450, NBRC 113160, Sphingomonas sp. JJ-A5, T. chloracetimidivorans

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
API60539.1	API60540.1	BSL82_15650	BSL82_15655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.791
API60539.1	API60541.1	BSL82_15650	BSL82_15660	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
API60539.1	API60542.1	BSL82_15650	BSL82_15665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
API60539.1	API60543.1	BSL82_15650	BSL82_15670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.610
API60539.1	API60544.1	BSL82_15650	BSL82_15675	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.610
API60539.1	API60545.1	BSL82_15650	BSL82_15680	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606
API60539.1	API60546.1	BSL82_15650	BSL82_15685	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.530
API60540.1	API60539.1	BSL82_15655	BSL82_15650	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.791
API60540.1	API60541.1	BSL82_15655	BSL82_15660	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
API60540.1	API60542.1	BSL82_15655	BSL82_15665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.781
API60540.1	API60543.1	BSL82_15655	BSL82_15670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.610
API60540.1	API60544.1	BSL82_15655	BSL82_15675	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.610
API60540.1	API60545.1	BSL82_15655	BSL82_15680	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606
API60540.1	API60546.1	BSL82_15655	BSL82_15685	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.530
API60541.1	API60539.1	BSL82_15660	BSL82_15650	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
API60541.1	API60540.1	BSL82_15660	BSL82_15655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
API60541.1	API60542.1	BSL82_15660	BSL82_15665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
API60541.1	API60543.1	BSL82_15660	BSL82_15670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.610
API60541.1	API60544.1	BSL82_15660	BSL82_15675	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.610
API60541.1	API60545.1	BSL82_15660	BSL82_15680	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606

page 1 of 3

Network Stats

number of nodes:

2

number of edges:

1

average node degree:

1

avg. local clustering coefficient:

1

expected number of edges:

1

PPI enrichment p-value:

0.5

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006091

Generation of precursor metabolites and energy

5 of 92

1.14

0.69

0.0184

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0050136

NADH dehydrogenase (quinone) activity

3 of 15

1.71

0.85

0.0202

GO:0010181

FMN binding

3 of 15

1.71

0.85

0.0202

GO:0050661

NADP binding

2 of 9

1.75

0.71

0.0430

GO:0016491

Oxidoreductase activity

5 of 145

0.94

0.58

0.0202

GO:0036094

Small molecule binding

7 of 467

0.58

0.35

0.0430

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2973

Cyclase activity, and Nicotinate-nucleotide adenylyltransferase activity

3 of 5

2.18

1.47

0.0016

CL:3372

Mixed, incl. SLBB domain, and ACP-like superfamily

2 of 5

2.01

0.71

0.0467

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00010

Glycolysis / Gluconeogenesis

3 of 33

1.36

0.8

0.0154

map01200

Carbon metabolism

4 of 86

1.07

0.67

0.0154

map01110

Biosynthesis of secondary metabolites

6 of 328

0.67

0.43

0.0209

map01100

Metabolic pathways

11 of 891

0.5

0.42

0.00040

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00037

4Fe-4S binding domain

3 of 17

1.65

0.83

0.0212

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