STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OKL46272.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)    
Predicted Functional Partners:
OKL46271.1
DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.989
OKL46270.1
DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.988
OKL46273.1
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.973
OKL46267.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.904
OKL48315.1
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.765
BSR28_08620
Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.765
OKL48316.1
Restriction endonuclease subunit R; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.689
atpF
Hypothetical protein; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
    
 
 0.591
OKL46268.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.545
OKL46269.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.545
Your Current Organism:
Actinomyces liubingyangii
NCBI taxonomy Id: 1921764
Other names: A. liubingyangii, Actinomyces liubingyangii Meng et al. 2017, Actinomyces sp. VUL4_1, Actinomyces sp. VUL4_2, CGMCC 4.7370, DSM 104050, strain VUL4_1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.