OKH22813.1 protein (Hydrococcus rivularis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OKH22813.1

Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)

Predicted Functional Partners:

OKH22812.1

0.832

OKH20442.1

0.675

OKH21206.1

0.639

OKH19153.1

0.607

OKH26868.1

0.589

OKH25272.1

0.575

OKH26643.1

0.560

OKH21687.1

0.546

OKH22971.1

0.538

OKH25512.1

0.511

Your Current Organism:

Hydrococcus rivularis

NCBI taxonomy Id: 1921803
Other names: H. rivularis NIES-593, Hydrococcus rivularis NIES-593, Hydrococcus rivularis Yu-52

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OKH19153.1	OKH22813.1	NIES593_21170	NIES593_11880	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.607
OKH19153.1	OKH25272.1	NIES593_21170	NIES593_05840	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.490
OKH20442.1	OKH21687.1	NIES593_18875	NIES593_14730	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.685
OKH20442.1	OKH22813.1	NIES593_18875	NIES593_11880	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.675
OKH21206.1	OKH21687.1	NIES593_16445	NIES593_14730	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.588
OKH21206.1	OKH22813.1	NIES593_16445	NIES593_11880	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
OKH21687.1	OKH20442.1	NIES593_14730	NIES593_18875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.685
OKH21687.1	OKH21206.1	NIES593_14730	NIES593_16445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.588
OKH21687.1	OKH22813.1	NIES593_14730	NIES593_11880	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
OKH21687.1	OKH26868.1	NIES593_14730	NIES593_02200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.609
OKH22812.1	OKH22813.1	NIES593_11875	NIES593_11880	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
OKH22813.1	OKH19153.1	NIES593_11880	NIES593_21170	Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.607
OKH22813.1	OKH20442.1	NIES593_11880	NIES593_18875	Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.675
OKH22813.1	OKH21206.1	NIES593_11880	NIES593_16445	Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
OKH22813.1	OKH21687.1	NIES593_11880	NIES593_14730	Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
OKH22813.1	OKH22812.1	NIES593_11880	NIES593_11875	Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
OKH22813.1	OKH22971.1	NIES593_11880	NIES593_10905	Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538
OKH22813.1	OKH25272.1	NIES593_11880	NIES593_05840	Derived by automated computational analysis using gene prediction method: Protein Homology.	Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
OKH22813.1	OKH25512.1	NIES593_11880	NIES593_03980	Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
OKH22813.1	OKH26643.1	NIES593_11880	NIES593_00870	Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.560

page 1 of 2

Network Stats

number of nodes:

11

number of edges:

39

average node degree:

7.09

avg. local clustering coefficient:

0.95

expected number of edges:

33

PPI enrichment p-value:

0.159

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006631

Fatty acid metabolic process

4 of 32

1.27

0.7

0.0247

GO:0044281

Small molecule metabolic process

10 of 316

0.67

0.55

0.00064

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1503

Mixed, incl. EAL domain, and tRNA synthetases class II (A)

5 of 13

1.76

2.12

1.41e-05

CL:1504

Mixed, incl. EAL domain, and Naphthalene degradation

3 of 7

1.81

1.29

0.0024

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00071

Fatty acid degradation

4 of 9

1.82

1.91

7.55e-05

map00626

Naphthalene degradation

3 of 7

1.81

1.4

0.0013

map00350

Tyrosine metabolism

3 of 10

1.65

1.25

0.0021

map01220

Degradation of aromatic compounds

3 of 13

1.54

1.14

0.0030

map00625

Chloroalkane and chloroalkene degradation

3 of 13

1.54

1.14

0.0030

(more ...)

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005835

Fatty acid synthase complex

2 of 2

2.17

0.74

0.0437

GOCC:0005737

Cytoplasm

9 of 474

0.45

0.29

0.0437

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0012

Acyltransferase

3 of 18

1.4

0.64

0.0444

KW-0808

Transferase

7 of 238

0.64

0.38

0.0444

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About