STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OKH22563.1Toxin Y4kP; Derived by automated computational analysis using gene prediction method: Protein Homology. (93 aa)    
Predicted Functional Partners:
OKH22562.1
CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.992
OKH25542.1
CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.957
OKH22325.1
Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.526
OKH22561.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.424
OKH22564.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.421
OKH22560.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.403
Your Current Organism:
Hydrococcus rivularis
NCBI taxonomy Id: 1921803
Other names: H. rivularis NIES-593, Hydrococcus rivularis NIES-593, Hydrococcus rivularis Yu-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.