STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OKH22395.1D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (501 aa)    
Predicted Functional Partners:
OKH23749.1
D-alanyl-D-alanine carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.932
OKH25162.1
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.797
OKH24136.1
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.796
OKH25218.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.759
OKH24217.1
Penicillin-binding protein 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.739
NIES593_19070
Resolvase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.696
OKH22599.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.694
NIES593_11735
Hypothetical protein; Frameshifted; incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.690
OKH25685.1
Cell division protein FtsW; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.
     
 0.672
OKH25150.1
Penicillin-binding protein 1C; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.668
Your Current Organism:
Hydrococcus rivularis
NCBI taxonomy Id: 1921803
Other names: H. rivularis NIES-593, Hydrococcus rivularis NIES-593, Hydrococcus rivularis Yu-52
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