STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cj0243cHypothetical protein Cj0243c; Original (2000) note: Cj0243c, unknown, len: 388 aa; no Hp match; Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown. (388 aa)    
Predicted Functional Partners:
Cj0241c
Putative iron-binding protein; Oxygen-binding protein. May be involved in a storage mechanism or for delivery to oxygen-requiring enzymes. The oxygen- binding site contains two iron atoms; Belongs to the hemerythrin family.
  
  
 0.612
Cj0878
Hypothetical protein Cj0878; Original (2000) note: Cj0878, unknown, len: 48 aa; no Hp match. Functional classification - Unknown.
      
 0.541
rpmI
Original (2000) note: Cj0244, rpmI, 50s ribosomal protein L35, len: 63 aa; similar to many e.g. RL35_ECOLI 50s ribosomal protein L35 (64 aa), fasta scores; opt: 133 z-score: 282.3 E(): 1.8e-08. 45.6% identity in 57 aa overlap. 60.7% identity to HP0125; Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification; PMID:16272117.
       0.521
Cj1650
Hypothetical protein Cj1650; Original (2000) note: Cj1650, unknown, len: 166 aa; 30.7% identity to HP1076. Functional classification -Conserved hypothetical proteins.
   
  
 0.520
Cj0239c
NifU protein homolog; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
     
 0.515
iscS
Original (2000) note: Cj0240c, probable aminotransferase (nifS protein homolog), len: 393 aa; similar to many e.g. NIFS_KLEPN nifS protein (397 aa),fasta scores; opt: 1067 z-score: 1533.6 E(): 0, 47.0% identity in 383 aa overlap. 62.8% identity to HP0220. Contains PS00132 Zinc carboxypeptidases, zinc-binding region 1 signature, PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site, and Pfam match to entry PF00266 aminotran_5, Aminotransferases class-V,score 358.80, E-value 5.9e-104; Updated (2006) note: Characterised within Escherichia coli with acceptable identity scor [...]
     
 0.439
Cj0800c
Putative ATPase; Original (2000) note: Cj0800c, unknown, len: 619 aa; 24.7% identity to HP0884. Also similar to Cj0044c (28.6% identity in 622 aa overlap); Updated (2006) note: Prosite domain PS00389 ATPase,F1 complex, OSCP/delta subunit signature identified within CDS. Product modified to more specific family member due to motif match. Not fully characterised so putative kept within product function. Functional classification - Misc.
   
   0.420
Cj0667
Putative S4 domain protein; Original (2000) note: Cj0667, unknown, len: 81 aa; similar to many hypothetical proteins e.g. YABO_BACSU (86 aa), fasta scores; opt: 149 z-score: 259.2 E(): 3.8e-07,35.4% identity in 79 aa overlap. 43.6% identity to HP1423; Updated (2006) note: Pfam domain PF01479 S4 domain was identified within CDS. The S4 domain probably mediates binding to RNA. Product modified to more specific family member due to motif match. No specific characterisation has been carried out. Putative kept within product function. Functional classification - Misc.
      
 0.405
Cj0898
Putative histidine triad (HIT) family protein; Original (2000) note: Cj0898, HIT-family protein,len: 121 aa; similar to many members of the HIT family e.g. IPK1_HUMAN HINT protein (protein kinase C inhibitor 1) (125 aa), fasta scores; opt: 286 z-score: 385.9 E(): 3.4e-14, 40.6% identity in 106 aa overlap, and YCFF_ECOLI HYPOTHETICAL 13.2 KD PROTEIN HIT-LIKE PROTE (119 aa),fasta scores; opt: 276 z-score: 373.2 E(): 1.7e-13, 38.2% identity in 110 aa overlap. 56.6% identity to HP0404. Contains Pfam match to entry PF01230 HIT, HIT family; Updated (2006) note: Specific characterisation has [...]
      
 0.405
Cj1025c
Hypothetical protein Cj1025c; Original (2000) note: Cj1025c, unknown, len: 149 aa; no Hp match. Functional classification - Unknown.
   
   0.405
Your Current Organism:
Campylobacter jejuni NCTC 11168
NCBI taxonomy Id: 192222
Other names: C. jejuni subsp. jejuni NCTC 11168 = ATCC 700819, Campylobacter jejuni subsp. jejuni ATCC 700819, Campylobacter jejuni subsp. jejuni ATCC 700819 = NCTC 11168, Campylobacter jejuni subsp. jejuni NCTC 11168, Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.