node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ndk | rpsB | Cj0332c | Cj1182c | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 30S ribosomal protein S2; Original (2000) note: Cj1182c, rpsB, 30S ribosomal protein S2, len: 263 aa; highly similar to many e.g. RS2_BACSU 30S ribosomal protein S2 (245 aa), fasta scores; opt: 886 z-score: 997.3 E(): 0, 56.1% identity in 237 aa overlap. 69.1% identity to HP1554. Contains PS00962 and PS00963 Ribosomal protein S2 signatures 1 and 2, and Pfam match to entry PF00318 S2, Ribosomal protein S2; Updated (2006) note: Characterised in Bacillus subtilis with acceptable identity score, so putative not added to product function. Functional classification -Ribosomal protein synthes [...] | 0.999 |
ndk | rpsE | Cj0332c | Cj1690c | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.999 |
ndk | rpsF | Cj0332c | Cj1070 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
ndk | rpsG | Cj0332c | Cj0492 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
ndk | rpsI | Cj0332c | Cj1479c | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 30S ribosomal protein S9; Original (2000) note: Cj1479c, rpsI, 30S ribosomal protein S9, len: 129 aa; similar to many e.g. RS9_ECOLI 30S ribosomal protein S9 (129 aa), fasta scores; opt: 400 z-score: 508.5 E(): 5.3e-21, 49.6% identity in 125 aa overlap. 77.5% identity to HP0083. Contains PS00360 Ribosomal protein S9 signature, and Pfam match to entry PF00380 S9, Ribosomal protein S9; Updated (2006) note: Characterised in Escherichia coli with acceptable similariy score. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification; PMI [...] | 0.999 |
ndk | rpsK | Cj0332c | Cj1593 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
ndk | rpsL | Cj0332c | Cj0491 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.999 |
ndk | rpsN | Cj0332c | Cj1694c | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.999 |
ndk | rpsO | Cj0332c | Cj0884 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.999 |
ndk | rpsP | Cj0332c | Cj0710 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | Original (2000) note: Cj0710, rpsP, 30S ribosomal protein S16, len: 75 aa; highly similar to many e.g. RS16_ECOLI 30S ribosomal protein S16 (82 aa), fasta scores; opt: 238 z-score: 352.6 E(): 2.4e-12, 45.9% identity in 74 aa overlap. 73.3% identity to HP1151. Contains PS00732 Ribosomal protein S16 signature, and Pfam match to entry PF00886 Ribosomal_S16; Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification; PMID:336510. | 0.999 |
rpsB | ndk | Cj1182c | Cj0332c | 30S ribosomal protein S2; Original (2000) note: Cj1182c, rpsB, 30S ribosomal protein S2, len: 263 aa; highly similar to many e.g. RS2_BACSU 30S ribosomal protein S2 (245 aa), fasta scores; opt: 886 z-score: 997.3 E(): 0, 56.1% identity in 237 aa overlap. 69.1% identity to HP1554. Contains PS00962 and PS00963 Ribosomal protein S2 signatures 1 and 2, and Pfam match to entry PF00318 S2, Ribosomal protein S2; Updated (2006) note: Characterised in Bacillus subtilis with acceptable identity score, so putative not added to product function. Functional classification -Ribosomal protein synthes [...] | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.999 |
rpsB | rpsE | Cj1182c | Cj1690c | 30S ribosomal protein S2; Original (2000) note: Cj1182c, rpsB, 30S ribosomal protein S2, len: 263 aa; highly similar to many e.g. RS2_BACSU 30S ribosomal protein S2 (245 aa), fasta scores; opt: 886 z-score: 997.3 E(): 0, 56.1% identity in 237 aa overlap. 69.1% identity to HP1554. Contains PS00962 and PS00963 Ribosomal protein S2 signatures 1 and 2, and Pfam match to entry PF00318 S2, Ribosomal protein S2; Updated (2006) note: Characterised in Bacillus subtilis with acceptable identity score, so putative not added to product function. Functional classification -Ribosomal protein synthes [...] | 30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.999 |
rpsB | rpsF | Cj1182c | Cj1070 | 30S ribosomal protein S2; Original (2000) note: Cj1182c, rpsB, 30S ribosomal protein S2, len: 263 aa; highly similar to many e.g. RS2_BACSU 30S ribosomal protein S2 (245 aa), fasta scores; opt: 886 z-score: 997.3 E(): 0, 56.1% identity in 237 aa overlap. 69.1% identity to HP1554. Contains PS00962 and PS00963 Ribosomal protein S2 signatures 1 and 2, and Pfam match to entry PF00318 S2, Ribosomal protein S2; Updated (2006) note: Characterised in Bacillus subtilis with acceptable identity score, so putative not added to product function. Functional classification -Ribosomal protein synthes [...] | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
rpsB | rpsG | Cj1182c | Cj0492 | 30S ribosomal protein S2; Original (2000) note: Cj1182c, rpsB, 30S ribosomal protein S2, len: 263 aa; highly similar to many e.g. RS2_BACSU 30S ribosomal protein S2 (245 aa), fasta scores; opt: 886 z-score: 997.3 E(): 0, 56.1% identity in 237 aa overlap. 69.1% identity to HP1554. Contains PS00962 and PS00963 Ribosomal protein S2 signatures 1 and 2, and Pfam match to entry PF00318 S2, Ribosomal protein S2; Updated (2006) note: Characterised in Bacillus subtilis with acceptable identity score, so putative not added to product function. Functional classification -Ribosomal protein synthes [...] | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
rpsB | rpsI | Cj1182c | Cj1479c | 30S ribosomal protein S2; Original (2000) note: Cj1182c, rpsB, 30S ribosomal protein S2, len: 263 aa; highly similar to many e.g. RS2_BACSU 30S ribosomal protein S2 (245 aa), fasta scores; opt: 886 z-score: 997.3 E(): 0, 56.1% identity in 237 aa overlap. 69.1% identity to HP1554. Contains PS00962 and PS00963 Ribosomal protein S2 signatures 1 and 2, and Pfam match to entry PF00318 S2, Ribosomal protein S2; Updated (2006) note: Characterised in Bacillus subtilis with acceptable identity score, so putative not added to product function. Functional classification -Ribosomal protein synthes [...] | 30S ribosomal protein S9; Original (2000) note: Cj1479c, rpsI, 30S ribosomal protein S9, len: 129 aa; similar to many e.g. RS9_ECOLI 30S ribosomal protein S9 (129 aa), fasta scores; opt: 400 z-score: 508.5 E(): 5.3e-21, 49.6% identity in 125 aa overlap. 77.5% identity to HP0083. Contains PS00360 Ribosomal protein S9 signature, and Pfam match to entry PF00380 S9, Ribosomal protein S9; Updated (2006) note: Characterised in Escherichia coli with acceptable similariy score. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification; PMI [...] | 0.999 |
rpsB | rpsK | Cj1182c | Cj1593 | 30S ribosomal protein S2; Original (2000) note: Cj1182c, rpsB, 30S ribosomal protein S2, len: 263 aa; highly similar to many e.g. RS2_BACSU 30S ribosomal protein S2 (245 aa), fasta scores; opt: 886 z-score: 997.3 E(): 0, 56.1% identity in 237 aa overlap. 69.1% identity to HP1554. Contains PS00962 and PS00963 Ribosomal protein S2 signatures 1 and 2, and Pfam match to entry PF00318 S2, Ribosomal protein S2; Updated (2006) note: Characterised in Bacillus subtilis with acceptable identity score, so putative not added to product function. Functional classification -Ribosomal protein synthes [...] | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
rpsB | rpsL | Cj1182c | Cj0491 | 30S ribosomal protein S2; Original (2000) note: Cj1182c, rpsB, 30S ribosomal protein S2, len: 263 aa; highly similar to many e.g. RS2_BACSU 30S ribosomal protein S2 (245 aa), fasta scores; opt: 886 z-score: 997.3 E(): 0, 56.1% identity in 237 aa overlap. 69.1% identity to HP1554. Contains PS00962 and PS00963 Ribosomal protein S2 signatures 1 and 2, and Pfam match to entry PF00318 S2, Ribosomal protein S2; Updated (2006) note: Characterised in Bacillus subtilis with acceptable identity score, so putative not added to product function. Functional classification -Ribosomal protein synthes [...] | 30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.999 |
rpsB | rpsN | Cj1182c | Cj1694c | 30S ribosomal protein S2; Original (2000) note: Cj1182c, rpsB, 30S ribosomal protein S2, len: 263 aa; highly similar to many e.g. RS2_BACSU 30S ribosomal protein S2 (245 aa), fasta scores; opt: 886 z-score: 997.3 E(): 0, 56.1% identity in 237 aa overlap. 69.1% identity to HP1554. Contains PS00962 and PS00963 Ribosomal protein S2 signatures 1 and 2, and Pfam match to entry PF00318 S2, Ribosomal protein S2; Updated (2006) note: Characterised in Bacillus subtilis with acceptable identity score, so putative not added to product function. Functional classification -Ribosomal protein synthes [...] | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.999 |
rpsB | rpsO | Cj1182c | Cj0884 | 30S ribosomal protein S2; Original (2000) note: Cj1182c, rpsB, 30S ribosomal protein S2, len: 263 aa; highly similar to many e.g. RS2_BACSU 30S ribosomal protein S2 (245 aa), fasta scores; opt: 886 z-score: 997.3 E(): 0, 56.1% identity in 237 aa overlap. 69.1% identity to HP1554. Contains PS00962 and PS00963 Ribosomal protein S2 signatures 1 and 2, and Pfam match to entry PF00318 S2, Ribosomal protein S2; Updated (2006) note: Characterised in Bacillus subtilis with acceptable identity score, so putative not added to product function. Functional classification -Ribosomal protein synthes [...] | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.999 |
rpsB | rpsP | Cj1182c | Cj0710 | 30S ribosomal protein S2; Original (2000) note: Cj1182c, rpsB, 30S ribosomal protein S2, len: 263 aa; highly similar to many e.g. RS2_BACSU 30S ribosomal protein S2 (245 aa), fasta scores; opt: 886 z-score: 997.3 E(): 0, 56.1% identity in 237 aa overlap. 69.1% identity to HP1554. Contains PS00962 and PS00963 Ribosomal protein S2 signatures 1 and 2, and Pfam match to entry PF00318 S2, Ribosomal protein S2; Updated (2006) note: Characterised in Bacillus subtilis with acceptable identity score, so putative not added to product function. Functional classification -Ribosomal protein synthes [...] | Original (2000) note: Cj0710, rpsP, 30S ribosomal protein S16, len: 75 aa; highly similar to many e.g. RS16_ECOLI 30S ribosomal protein S16 (82 aa), fasta scores; opt: 238 z-score: 352.6 E(): 2.4e-12, 45.9% identity in 74 aa overlap. 73.3% identity to HP1151. Contains PS00732 Ribosomal protein S16 signature, and Pfam match to entry PF00886 Ribosomal_S16; Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification; PMID:336510. | 0.999 |