Original (2000) note: Cj1476c, probable pyruvate-flavodoxin oxidoreductase, len: 1186 aa; highly similar to many e.g. NIFJ_ECOLI probable pyruvate-flavodoxin oxidoreductase (1174 aa), fasta scores; opt: 3586 z-score: 3799.5 E(): 0, 47.2% identity in 1193 aa overlap. N-term has 28.6% identity to HP1110,C-term has 29.7% identity to HP1111. Contains 2x PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature,and Pfam match to entry PF00037 fer4, 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains; Updated (2006) note: Pfam domains PF02775 Thiamine pyrophosphate enzy [...]

30S ribosomal protein S1; Original (2000) note: Cj0893c, rpsA, probable 30S ribosomal protein S1, len: 556 aa; similar to many e.g. RS1_ECOLI 30S ribosomal protein S1 (557 aa), fasta scores; opt: 1053 z-score: 1148.3 E(): 0, 33.4% identity in 548 aa overlap. 47.0% identity to HP0399. Contains 6x Pfam match to entry PF00575 S1, S1 RNA binding domain; Updated (2006) note: Characterised in Escherichia coli with marginal identity score. Appropriate motifs present. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification; PMID:6267426.

Putative periplasmic protein; Original (2000) note: Cj0892c, probable periplasmic protein, len: 162 aa; no Hp match. Functional classification - Miscellaneous periplasmic proteins.

Original (2000) note: Cj0888c, ABC transport system ATP-binding protein, len: 643 aa; similar to UUP_ECOLI ABC transporter atp-binding protein UUP (635 aa), fasta scores; opt: 744 z-score: 763.9 E(): 0, 37.1% identity in 634 aa overlap. No Hp ortholog. Contains 2x PS00017 ATP/GTP-binding site motif A (P-loop), 2x PS00211 ABC transporters family signature, and 2x Pfam match to entry PF00005 ABC_tran; Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Transport/binding proteins - Ot [...]

Original (2000) note: Cj0890c, probable sensory transduction transcriptional regulator, len: 220 aa; similar to many e.g. PHOB_SHIFL phosphate regulon transcriptional regulator (229 aa), fasta scores; opt: 396 z-score: 471.5 E(): 5.8e-19, 29.3% identity in 222 aa overlap. No Hp ortholog. Contains Pfam match to entry PF00072 response_reg, Response regulator receiver domain and Pfam match to entry PF00486 trans_reg_C,Transcriptional regulatory protein, C terminal; Updated (2006) note: Characterisation within more than one genus, however, identity scores were marginal. Putative kept withi [...]

Original (2000) note: Cj0889c, probable sensory transduction histidine kinase, len: 429 aa; similar in C-terminus to many e.g. ENVZ_ECOLI osmolarity sensor protein ENVZ (450 aa), fasta scores; opt: 210 z-score: 229.3 E(): 1.8e-05. 26.5% identity in 204 aa overlap No Hp ortholog. Contains two probable transmembrane domains in N-terminus and Pfam match to entry PF00512 signal, Signal carboxyl-terminal domain; Updated (2006) note: Pfam domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase identified within CDS. Further support given to product function. Some characterisat [...]

50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.

Flagellar motor switch protein; Original (2000) note: Cj0060c, fliM, probable flagellar motor switch protein, len: 359 aa; simlar to e.g. FLIM_BACSU flagellar motor switch protein fliM (332 aa), fasta scores; opt: 728 z-score: 1046.5 E(): 0, 35.6% identity in 329 aa overlap. 61.1% identity to HP1031; Updated (2006) note: Pfam domain PF01052 Surface presentation of antigens (SPOA) protein and PF02154 Flagellar motor switch protein FliM were identified within CDS. Further support given to product function. Characterised within Bacillus subtilis with acceptable identity score. Thus, putat [...]