STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0X71_15790Hydrolase Cof; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)    
Predicted Functional Partners:
AQQ53171.1
Ring-cleaving dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.993
AQQ52104.1
Ring-cleaving dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.989
AQQ53997.1
Ring-cleaving dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.989
B0X71_08750
MarR family transcriptional regulator; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.972
AQQ53167.1
Ring-cleaving dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.967
AQQ54986.1
Heat-shock protein HtpX; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.966
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.900
AQQ54105.1
Patatin; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.877
AQQ52298.1
DNA-3-methyladenine glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.859
AQQ53168.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.849
Your Current Organism:
Planococcus maritimus
NCBI taxonomy Id: 192421
Other names: DSM 17275, JCM 11543, KCCM 41587, P. maritimus, Planococcus maritimus Yoon et al. 2003 emend. Ivanova et al. 2006, Planococcus sp. KMM 3738, strain TF-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.