STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAW27867.1Hypothetical protein. (314 aa)    
Predicted Functional Partners:
GAW27868.1
Thiamin pyrophosphokinase.
 
  
 0.976
GAW27865.1
Hypothetical protein.
 
     0.954
GAW27866.1
Glycosyl transferase.
 
     0.947
GAW27853.1
Hypothetical protein.
 
     0.858
GAW29732.1
Hypothetical protein.
 
     0.786
GAW27864.1
AAA family ATPase.
       0.668
GAW27869.1
Sporulation transcription factor Spo0A.
       0.589
GAW29766.1
Hypothetical protein.
  
     0.567
GAW29800.1
Sporulation lipoprotein, YhcN/YlaJ family.
  
     0.531
GAW29055.1
Hypothetical protein.
  
     0.481
Your Current Organism:
Carboxydocella sp. ULO1
NCBI taxonomy Id: 1926599
Other names: C. sp. ULO1
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