STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAW28258.14-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase. (348 aa)    
Predicted Functional Partners:
GAW27501.1
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
 
  
 0.977
GAW28260.1
1-deoxy-D-xylulose-5-phosphate reductoisomerase.
 
   
 0.975
GAW28083.1
Hypothetical protein.
  
 
 0.955
GAW27502.1
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase.
 
  
 0.949
GAW29862.1
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase.
  
   
 0.864
GAW28429.1
1-deoxy-D-xylulose-5-phosphate synthase.
 
   
 0.838
GAW28257.1
proline--tRNA ligase.
  
    0.809
GAW28259.1
Peptidase.
       0.794
GAW28263.1
Ditrans,polycis-undecaprenyl-diphosphate synthase.
  
  
 0.783
GAW28262.1
Phosphatidate cytidylyltransferase.
     
 0.777
Your Current Organism:
Carboxydocella sp. ULO1
NCBI taxonomy Id: 1926599
Other names: C. sp. ULO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.