STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAW28428.1Ribosomal RNA large subunit methyltransferase J. (269 aa)    
Predicted Functional Partners:
GAW28429.1
1-deoxy-D-xylulose-5-phosphate synthase.
 
    0.871
GAW28430.1
Hypothetical protein.
     
 0.835
GAW30201.1
Histidine triad (HIT) protein.
      0.715
GAW28912.1
DNA-directed RNA polymerase subunit beta'.
   
  
 0.645
GAW27876.1
NAD(+) kinase.
  
  
 0.583
GAW28431.1
Farnesyl-diphosphate synthase.
 
    0.561
GAW28630.1
Farnesyl-diphosphate synthase.
 
    0.556
GAW28427.1
CBS domain-containing protein.
  
    0.530
GAW29269.1
phenylalanine--tRNA ligase subunit beta.
  
  
 0.507
GAW28988.1
methionine--tRNA ligase.
 
  
 0.474
Your Current Organism:
Carboxydocella sp. ULO1
NCBI taxonomy Id: 1926599
Other names: C. sp. ULO1
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