STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAW28680.1Transcriptional repressor. (132 aa)    
Predicted Functional Partners:
GAW27588.1
DNA-directed RNA polymerase subunit alpha.
   
   0.883
GAW29042.1
Glutamate synthase subunit alpha.
    
 0.875
GAW28939.1
CoA-binding protein.
  
    0.672
GAW28419.1
RNA polymerase sigma factor RpoD.
  
 
 0.660
GAW29027.1
Rubredoxin.
  
  
 0.616
GAW30111.1
Peptide deformylase.
   
    0.604
GAW28678.1
MoxR-like ATPase.
  
    0.583
GAW28679.1
VWA containing CoxE family protein.
       0.580
GAW28386.1
Thioredoxin-disulfide reductase.
  
 
 0.577
GAW27487.1
Bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor.
     
 0.576
Your Current Organism:
Carboxydocella sp. ULO1
NCBI taxonomy Id: 1926599
Other names: C. sp. ULO1
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