STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAW28710.1Hypothetical protein. (381 aa)    
Predicted Functional Partners:
GAW28709.1
Hypothetical protein.
  
 
 0.978
GAW27725.1
RNA polymerase subunit sigma-24.
  
 
 0.907
GAW27464.1
DNA-directed RNA polymerase sigma-70 factor.
  
 
 0.903
GAW28473.1
RNA polymerase factor sigma-70.
  
 
 0.903
GAW28711.1
DNA polymerase I.
       0.720
GAW28712.1
DNA-formamidopyrimidine glycosylase.
       0.570
GAW28708.1
MFS transporter.
       0.565
GAW30105.1
Serine/threonine protein kinase.
    
 
 0.507
GAW28713.1
Sporulation membrane protein YtaF.
       0.445
Your Current Organism:
Carboxydocella sp. ULO1
NCBI taxonomy Id: 1926599
Other names: C. sp. ULO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.