STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAW28958.1Helix-turn-helix domain protein. (101 aa)    
Predicted Functional Partners:
GAW28957.1
Hypothetical protein.
       0.773
GAW29633.1
Competence protein CinA.
    
 0.685
GAW28959.1
Transcriptional regulator.
 
    
0.570
GAW28960.1
Hypothetical protein.
       0.513
GAW28961.1
Hypothetical protein.
       0.513
GAW28962.1
Hypothetical protein.
       0.513
GAW29189.1
Thiamine biosynthesis protein ThiS.
  
  
  0.509
GAW29007.1
Response regulator.
    
  0.508
GAW28760.1
PAPS reductase/FAD synthetase family protein.
    
  0.477
GAW28385.1
Transcriptional regulator.
  
    0.446
Your Current Organism:
Carboxydocella sp. ULO1
NCBI taxonomy Id: 1926599
Other names: C. sp. ULO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.