STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAW29083.1Shikimate kinase. (186 aa)    
Predicted Functional Partners:
GAW29082.1
3-dehydroquinate synthase.
 
 0.999
GAW29098.1
Shikimate dehydrogenase.
 
 0.996
GAW29084.1
Chorismate synthase.
 
 
 0.985
GAW28088.1
3-phosphoshikimate 1-carboxyvinyltransferase.
 
 
 0.980
GAW29737.1
Prephenate dehydratase.
  
 
 0.961
GAW28456.1
3-dehydroquinate dehydratase.
  
 0.959
GAW29738.1
Prephenate dehydratase.
  
 0.880
GAW28089.1
Hypothetical protein.
 
 
 0.866
GAW29081.1
Putative peptidase.
       0.773
GAW29271.1
3-deoxy-7-phosphoheptulonate synthase.
 
 
 0.630
Your Current Organism:
Carboxydocella sp. ULO1
NCBI taxonomy Id: 1926599
Other names: C. sp. ULO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.