STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAW29091.1Prepilin peptidase. (247 aa)    
Predicted Functional Partners:
GAW29093.1
Pilus assembly protein PilC.
 
  
 0.956
GAW29095.1
Type IV pilus assembly protein PilB.
 
 
 0.955
GAW29087.1
Pilus assembly protein PilM.
 
  
 0.949
GAW29092.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
  
 0.931
GAW29094.1
Twitching motility protein PilT.
 
   
 0.929
GAW28041.1
Competence protein ComEC.
 
  
 0.857
GAW29090.1
General secretion pathway protein GspH.
     
 0.824
GAW28313.1
DNA processing protein DprA.
 
  
 0.812
GAW29089.1
Hypothetical protein.
     
 0.804
GAW29088.1
Hypothetical protein.
       0.731
Your Current Organism:
Carboxydocella sp. ULO1
NCBI taxonomy Id: 1926599
Other names: C. sp. ULO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.