STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAW29168.1Uroporphyrinogen decarboxylase. (342 aa)    
Predicted Functional Partners:
GAW29166.1
Hypothetical protein.
 
 0.997
GAW29167.1
Hypothetical protein.
 
  
 0.991
GAW29974.1
Hydroxymethylbilane synthase.
 0.969
GAW29975.1
uroporphyrin-III C-methyltransferase.
  
 
 0.930
GAW28054.1
Coproporphyrinogen III oxidase.
 
 
 0.809
GAW28842.1
Coproporphyrinogen III oxidase, anaerobic.
  
 
 0.802
GAW29042.1
Glutamate synthase subunit alpha.
    
 0.738
GAW29165.1
Hypothetical protein.
       0.707
GAW29976.1
Delta-aminolevulinic acid dehydratase.
 
 
 0.616
GAW28711.1
DNA polymerase I.
     
 0.601
Your Current Organism:
Carboxydocella sp. ULO1
NCBI taxonomy Id: 1926599
Other names: C. sp. ULO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.