STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAW29734.1Cyclase. (145 aa)    
Predicted Functional Partners:
GAW29735.1
Aspartate aminotransferase family protein.
 
     0.859
GAW27491.1
Shikimate dehydrogenase.
  
     0.736
GAW27490.1
Quinate 5-dehydrogenase.
  
     0.730
GAW28808.1
Quinate 5-dehydrogenase.
  
     0.718
GAW29860.1
Uncharacterized protein XD66_0472.
  
     0.699
GAW29736.1
Dehydrogenase.
       0.601
GAW29737.1
Prephenate dehydratase.
  
    0.601
GAW29738.1
Prephenate dehydratase.
  
    0.601
GAW29733.1
Group 1 glycosyl transferase.
  
    0.580
GAW27944.1
Long chain fatty acid acyl-coa ligase.
   
 
  0.555
Your Current Organism:
Carboxydocella sp. ULO1
NCBI taxonomy Id: 1926599
Other names: C. sp. ULO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.