Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
E4663_06425 | E4663_11240 | GCA_900166575_01688 | GCA_900166575_02939 | Unannotated protein. | Unannotated protein. | 0.434 |
E4663_06425 | fmt | GCA_900166575_01688 | GCA_900166575_01920 | Unannotated protein. | Unannotated protein; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.434 |
E4663_06425 | rplM | GCA_900166575_01688 | GCA_900166575_03919 | Unannotated protein. | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.500 |
E4663_06425 | rpmD | GCA_900166575_01688 | GCA_900166575_03935 | Unannotated protein. | Unannotated protein. | 0.593 |
E4663_06425 | rsmB | GCA_900166575_01688 | GCA_900166575_01919 | Unannotated protein. | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.976 |
E4663_07820 | E4663_11240 | GCA_900166575_01918 | GCA_900166575_02939 | Unannotated protein. | Unannotated protein. | 0.764 |
E4663_07820 | fmt | GCA_900166575_01918 | GCA_900166575_01920 | Unannotated protein. | Unannotated protein; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.946 |
E4663_07820 | rsmB | GCA_900166575_01918 | GCA_900166575_01919 | Unannotated protein. | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.954 |
E4663_11240 | E4663_06425 | GCA_900166575_02939 | GCA_900166575_01688 | Unannotated protein. | Unannotated protein. | 0.434 |
E4663_11240 | E4663_07820 | GCA_900166575_02939 | GCA_900166575_01918 | Unannotated protein. | Unannotated protein. | 0.764 |
E4663_11240 | rlmN | GCA_900166575_02939 | GCA_900166575_01480 | Unannotated protein. | Unannotated protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. | 0.474 |
E4663_11240 | rsmB | GCA_900166575_02939 | GCA_900166575_01919 | Unannotated protein. | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.999 |
fmt | E4663_06425 | GCA_900166575_01920 | GCA_900166575_01688 | Unannotated protein; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Unannotated protein. | 0.434 |
fmt | E4663_07820 | GCA_900166575_01920 | GCA_900166575_01918 | Unannotated protein; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Unannotated protein. | 0.946 |
fmt | rlmN | GCA_900166575_01920 | GCA_900166575_01480 | Unannotated protein; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Unannotated protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. | 0.591 |
fmt | rsmB | GCA_900166575_01920 | GCA_900166575_01919 | Unannotated protein; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.999 |
rlmN | E4663_11240 | GCA_900166575_01480 | GCA_900166575_02939 | Unannotated protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. | Unannotated protein. | 0.474 |
rlmN | fmt | GCA_900166575_01480 | GCA_900166575_01920 | Unannotated protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. | Unannotated protein; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.591 |
rlmN | rsmB | GCA_900166575_01480 | GCA_900166575_01919 | Unannotated protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.981 |
rplM | E4663_06425 | GCA_900166575_03919 | GCA_900166575_01688 | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Unannotated protein. | 0.500 |
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