STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
E4663_11935Unannotated protein. (119 aa)    
Predicted Functional Partners:
E4663_11940
Unannotated protein.
       0.772
E4663_11415
Unannotated protein.
 
  0.669
E4663_04645
Unannotated protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.644
E4663_11865
Unannotated protein; Belongs to the sulfur carrier protein TusA family.
  
 
 0.636
ybeY
Unannotated protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
    
   0.617
rpsQ
Unannotated protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
   0.552
E4663_11860
Unannotated protein.
 
  0.533
E4663_04760
Unannotated protein.
   
 0.511
rplQ
Unannotated protein.
   
   0.491
rplU
Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
   0.485
Your Current Organism:
Halobacillus salinus
NCBI taxonomy Id: 192814
Other names: H. salinus, Halobacillus salinus Yoon et al. 2003, JCM 11546, KCCM 41590, strain HSL-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.