STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
E4663_13250Unannotated protein. (337 aa)    
Predicted Functional Partners:
trxB
Unannotated protein.
  
  0.788
E4663_09960
Unannotated protein.
  
     0.739
E4663_10135
Unannotated protein.
  
     0.726
E4663_06120
Unannotated protein.
  
     0.720
E4663_14500
Unannotated protein.
 
 0.708
ribBA
Unannotated protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.706
E4663_09485
Unannotated protein.
  
     0.697
E4663_04105
Unannotated protein.
  
     0.668
mreD
Unannotated protein.
  
     0.663
E4663_05795
Unannotated protein; Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis; Belongs to the MecA family.
  
    0.658
Your Current Organism:
Halobacillus salinus
NCBI taxonomy Id: 192814
Other names: H. salinus, Halobacillus salinus Yoon et al. 2003, JCM 11546, KCCM 41590, strain HSL-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.