STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufDUnannotated protein. (434 aa)    
Predicted Functional Partners:
sufC
Unannotated protein.
 
 0.998
E4663_12765
Unannotated protein; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.998
E4663_12760
Unannotated protein.
 
  
 0.986
sufB
Unannotated protein.
 
  
0.949
E4663_09690
Unannotated protein.
 
   
 0.802
E4663_12645
Unannotated protein; Belongs to the HesB/IscA family.
  
 
 0.543
E4663_14660
Unannotated protein.
  
 
 0.543
E4663_12750
Unannotated protein.
       0.444
E4663_12745
Unannotated protein; Belongs to the 5'-nucleotidase family.
       0.434
ispDF
Unannotated protein; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF).
  
  
 0.418
Your Current Organism:
Halobacillus salinus
NCBI taxonomy Id: 192814
Other names: H. salinus, Halobacillus salinus Yoon et al. 2003, JCM 11546, KCCM 41590, strain HSL-3
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.