Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
E4663_12470 | menA | GCA_900166575_03577 | GCA_900166575_03570 | Unannotated protein. | Unannotated protein; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. | 0.409 |
E4663_12470 | menB | GCA_900166575_03577 | GCA_900166575_03574 | Unannotated protein. | Unannotated protein; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA). | 0.471 |
E4663_12470 | menC | GCA_900166575_03577 | GCA_900166575_03576 | Unannotated protein. | Unannotated protein; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB). | 0.631 |
E4663_12470 | menD | GCA_900166575_03577 | GCA_900166575_03572 | Unannotated protein. | Unannotated protein; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily. | 0.492 |
E4663_12470 | menE-2 | GCA_900166575_03577 | GCA_900166575_03575 | Unannotated protein. | Unannotated protein; Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA); Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily. | 0.631 |
E4663_12470 | menF | GCA_900166575_03577 | GCA_900166575_03571 | Unannotated protein. | Unannotated protein; Catalyzes the conversion of chorismate to isochorismate. | 0.522 |
E4663_12470 | menH | GCA_900166575_03577 | GCA_900166575_03573 | Unannotated protein. | Unannotated protein; Catalyzes a proton abstraction reaction that results in 2,5- elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6- hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC). | 0.485 |
E4663_12510 | menA | GCA_900166575_03569 | GCA_900166575_03570 | Unannotated protein. | Unannotated protein; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. | 0.975 |
E4663_12510 | menB | GCA_900166575_03569 | GCA_900166575_03574 | Unannotated protein. | Unannotated protein; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA). | 0.984 |
E4663_12510 | menC | GCA_900166575_03569 | GCA_900166575_03576 | Unannotated protein. | Unannotated protein; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB). | 0.460 |
E4663_12510 | menD | GCA_900166575_03569 | GCA_900166575_03572 | Unannotated protein. | Unannotated protein; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily. | 0.720 |
E4663_12510 | menE-2 | GCA_900166575_03569 | GCA_900166575_03575 | Unannotated protein. | Unannotated protein; Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA); Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily. | 0.499 |
E4663_12510 | menF | GCA_900166575_03569 | GCA_900166575_03571 | Unannotated protein. | Unannotated protein; Catalyzes the conversion of chorismate to isochorismate. | 0.636 |
E4663_12510 | menH | GCA_900166575_03569 | GCA_900166575_03573 | Unannotated protein. | Unannotated protein; Catalyzes a proton abstraction reaction that results in 2,5- elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6- hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC). | 0.472 |
fapR | menA | GCA_900166575_01870 | GCA_900166575_03570 | Unannotated protein; Transcriptional factor involved in regulation of membrane lipid biosynthesis by repressing genes involved in fatty acid and phospholipid metabolism. | Unannotated protein; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. | 0.495 |
fapR | menB | GCA_900166575_01870 | GCA_900166575_03574 | Unannotated protein; Transcriptional factor involved in regulation of membrane lipid biosynthesis by repressing genes involved in fatty acid and phospholipid metabolism. | Unannotated protein; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA). | 0.491 |
menA | E4663_12470 | GCA_900166575_03570 | GCA_900166575_03577 | Unannotated protein; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. | Unannotated protein. | 0.409 |
menA | E4663_12510 | GCA_900166575_03570 | GCA_900166575_03569 | Unannotated protein; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. | Unannotated protein. | 0.975 |
menA | fapR | GCA_900166575_03570 | GCA_900166575_01870 | Unannotated protein; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. | Unannotated protein; Transcriptional factor involved in regulation of membrane lipid biosynthesis by repressing genes involved in fatty acid and phospholipid metabolism. | 0.495 |
menA | menB | GCA_900166575_03570 | GCA_900166575_03574 | Unannotated protein; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. | Unannotated protein; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA). | 0.884 |
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