STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI41414.1Serine/threonine protein phosphatase 1. (241 aa)    
Predicted Functional Partners:
SHI41453.1
Hypothetical protein.
 
     0.803
SHI41497.1
Membrane protease subunit, stomatin/prohibitin family, contains C-terminal Zn-ribbon domain.
 
     0.674
SHI41373.1
Acyl-[acyl-carrier-protein] desaturase.
       0.588
SHJ59573.1
Hypothetical protein.
  
     0.578
SHJ85778.1
Protein of unknown function.
  
     0.500
SHJ26433.1
Hypothetical protein.
  
     0.492
SHJ68001.1
Putative MetA-pathway of phenol degradation.
  
     0.444
SHJ41625.1
Hypothetical protein.
  
     0.435
SHI96049.1
CarboxypepD_reg-like domain-containing protein.
  
     0.418
SHI50195.1
Hypothetical protein.
  
     0.414
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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