STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI49354.1GH3 auxin-responsive promoter. (498 aa)    
Predicted Functional Partners:
SHI90696.1
Acyl-CoA reductase (LuxC).
  
 
  0.793
SHI50573.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
 0.760
SHJ58732.1
Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor.
     
 0.733
SHJ48222.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.690
SHI53075.1
Protein of unknown function.
  
     0.645
SHJ37979.1
Capsular exopolysaccharide family.
    
  0.626
SHJ60599.1
Protein involved in gliding motility EpsB.
    
  0.626
SHJ61612.1
Capsular exopolysaccharide family.
    
  0.626
SHI49390.1
Hypothetical protein.
       0.593
SHI35844.1
uroporphyrinogen-III synthase.
  
     0.589
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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