STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI55724.1Sugar phosphate isomerase/epimerase. (350 aa)    
Predicted Functional Partners:
SHI55617.1
Predicted dehydrogenase.
 
 
  0.857
SHI55688.1
Choline dehydrogenase.
 
     0.766
SHI55757.1
Protein of unknown function.
 
     0.637
SHI55479.1
Choline dehydrogenase.
 
     0.541
SHJ22798.1
Choline dehydrogenase.
 
     0.540
SHI99416.1
Choline dehydrogenase.
 
     0.517
SHJ96446.1
Choline dehydrogenase.
 
     0.491
SHJ96473.1
Gluconate 2-dehydrogenase subunit 3.
 
     0.489
SHI64813.1
Sugar phosphate isomerase/epimerase.
 
     0.479
SHI99380.1
Gluconate 2-dehydrogenase subunit 3.
 
     0.472
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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