STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI57895.1Rhamnogalacturonyl hydrolase YesR. (372 aa)    
Predicted Functional Partners:
SHI57930.1
Hypothetical protein.
     0.969
SHI57962.1
Lysophospholipase L1.
 
  0.907
SHJ04052.1
Protein of unknown function.
 
      0.890
SHI57819.1
Acetyl esterase/lipase.
     0.800
SHJ23453.1
Glycosyl Hydrolase Family 88.
  
     0.699
SHI58680.1
Lysophospholipase L1.
 
  
  0.686
SHI58645.1
Pectinesterase.
 
  
  0.620
SHI58001.1
Transcriptional regulator, GntR family.
 
     0.591
SHJ05592.1
Beta galactosidase small chain.
  
  
  0.571
SHI58568.1
Protein of unknown function.
 
     0.564
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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