STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI60062.1Predicted dehydrogenase. (322 aa)    
Predicted Functional Partners:
SHI60099.1
Predicted dehydrogenase.
 
     0.762
SHI64847.1
Uncharacterized membrane protein.
  
     0.741
SHJ80943.1
Protein of unknown function.
  
     0.719
SHI43422.1
Hypothetical protein.
  
     0.696
SHI46005.1
Dihydrodipicolinate synthase/N-acetylneuraminate lyase.
 
     0.682
SHI46041.1
Nucleoside-diphosphate-sugar epimerase.
 
    0.668
SHJ29961.1
Hypothetical protein.
  
     0.658
SHJ29282.1
Hypothetical protein.
  
     0.648
SHJ94349.1
Alpha/beta hydrolase family protein.
  
     0.646
SHJ30022.1
Hypothetical protein.
  
     0.641
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.