STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI64576.1L-ribulose 5-phosphate 4-epimerase. (234 aa)    
Predicted Functional Partners:
araB
L-ribulokinase.
 
 
 0.996
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 0.996
SHI65627.1
Xylulokinase.
 
 
 0.923
SHJ48931.1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.884
uxaC
D-glucuronate isomerase.
     
 0.878
SHI58036.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
    
 0.830
SHJ87574.1
Ribulose-bisphosphate carboxylase large chain; Belongs to the RuBisCO large chain family.
  
 
 0.818
SHI51184.1
Aldo/keto reductase.
    
 0.750
SHI82913.1
Aldo/keto reductase family protein.
    
 0.750
SHI58116.1
Sugar (pentulose or hexulose) kinase.
  
 
 0.721
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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