STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI67905.1LPS export ABC transporter protein LptC. (187 aa)    
Predicted Functional Partners:
SHI67857.1
Hypothetical protein.
 
     0.880
SHI67941.1
Hypothetical protein.
 
     0.853
SHI67983.1
Hemolysin, contains CBS domains.
       0.782
SHI49163.1
Protein of unknown function.
 
 
 0.763
SHJ50292.1
Hypothetical protein.
  
     0.754
SHJ39368.1
Family of unknown function.
  
     0.749
SHI38916.1
Protein of unknown function.
  
     0.731
SHI36797.1
Hypothetical protein.
  
     0.712
SHI48394.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.711
SHI51868.1
Penicillin-binding protein 1A.
  
 
 0.707
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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