Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHI36346.1 | SHI47164.1 | SAMN04488513_10172 | SAMN04488513_101390 | Hypothetical protein. | Outer membrane receptor proteins, mostly Fe transport. | 0.589 |
SHI36346.1 | SHI90950.1 | SAMN04488513_10172 | SAMN04488513_102242 | Hypothetical protein. | Iron complex outermembrane recepter protein. | 0.489 |
SHI36346.1 | SHJ45538.1 | SAMN04488513_10172 | SAMN04488513_1057 | Hypothetical protein. | Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.405 |
SHI36346.1 | SHJ59404.1 | SAMN04488513_10172 | SAMN04488513_10696 | Hypothetical protein. | Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.425 |
SHI47164.1 | SHI36346.1 | SAMN04488513_101390 | SAMN04488513_10172 | Outer membrane receptor proteins, mostly Fe transport. | Hypothetical protein. | 0.589 |
SHI47164.1 | SHI90950.1 | SAMN04488513_101390 | SAMN04488513_102242 | Outer membrane receptor proteins, mostly Fe transport. | Iron complex outermembrane recepter protein. | 0.409 |
SHI47164.1 | SHJ45538.1 | SAMN04488513_101390 | SAMN04488513_1057 | Outer membrane receptor proteins, mostly Fe transport. | Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.533 |
SHI47164.1 | SHJ59404.1 | SAMN04488513_101390 | SAMN04488513_10696 | Outer membrane receptor proteins, mostly Fe transport. | Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.594 |
SHI47164.1 | SHJ81766.1 | SAMN04488513_101390 | SAMN04488513_109118 | Outer membrane receptor proteins, mostly Fe transport. | Hypothetical protein. | 0.533 |
SHI47164.1 | SHK00017.1 | SAMN04488513_101390 | SAMN04488513_1162 | Outer membrane receptor proteins, mostly Fe transport. | Outer membrane transport energization protein TonB. | 0.533 |
SHI90893.1 | SHI90924.1 | SAMN04488513_102240 | SAMN04488513_102241 | Hypothetical protein. | Hypothetical protein. | 0.579 |
SHI90893.1 | SHI90950.1 | SAMN04488513_102240 | SAMN04488513_102242 | Hypothetical protein. | Iron complex outermembrane recepter protein. | 0.452 |
SHI90924.1 | SHI90893.1 | SAMN04488513_102241 | SAMN04488513_102240 | Hypothetical protein. | Hypothetical protein. | 0.579 |
SHI90924.1 | SHI90950.1 | SAMN04488513_102241 | SAMN04488513_102242 | Hypothetical protein. | Iron complex outermembrane recepter protein. | 0.620 |
SHI90950.1 | SHI36346.1 | SAMN04488513_102242 | SAMN04488513_10172 | Iron complex outermembrane recepter protein. | Hypothetical protein. | 0.489 |
SHI90950.1 | SHI47164.1 | SAMN04488513_102242 | SAMN04488513_101390 | Iron complex outermembrane recepter protein. | Outer membrane receptor proteins, mostly Fe transport. | 0.409 |
SHI90950.1 | SHI90893.1 | SAMN04488513_102242 | SAMN04488513_102240 | Iron complex outermembrane recepter protein. | Hypothetical protein. | 0.452 |
SHI90950.1 | SHI90924.1 | SAMN04488513_102242 | SAMN04488513_102241 | Iron complex outermembrane recepter protein. | Hypothetical protein. | 0.620 |
SHI90950.1 | SHJ03260.1 | SAMN04488513_102242 | SAMN04488513_102620 | Iron complex outermembrane recepter protein. | S-layer like family, C-terminal region. | 0.449 |
SHI90950.1 | SHJ05085.1 | SAMN04488513_102242 | SAMN04488513_102682 | Iron complex outermembrane recepter protein. | Hypothetical protein. | 0.559 |
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