STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI93566.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (224 aa)    
Predicted Functional Partners:
SHI93528.1
Signal transduction histidine kinase.
 
  0.972
SHJ34917.1
PAS domain S-box-containing protein.
  
 0.834
SHJ36707.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
  
 0.812
SHI86576.1
Tetratricopeptide repeat-containing protein.
  
  0.640
SHI43708.1
Signal transduction histidine kinase.
   
 0.628
SHI96984.1
His Kinase A (phospho-acceptor) domain-containing protein.
   
 0.628
SHJ50893.1
Signal transduction histidine kinase.
   
 0.628
SHI54867.1
Signal transduction histidine kinase.
  
 0.612
SHI88925.1
Signal transduction histidine kinase.
   
 0.609
SHJ69699.1
Signal transduction histidine kinase.
  
 
   0.604
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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