STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI95027.1Imidazolonepropionase. (497 aa)    
Predicted Functional Partners:
SHI62225.1
Histidine ammonia-lyase.
  
  
 0.703
SHI95057.1
Hypothetical protein.
       0.686
SHI55267.1
C1q domain-containing protein.
  
     0.581
SHJ74799.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.571
SHJ26565.1
C-terminal domain of CHU protein family protein.
  
     0.569
SHJ95066.1
Hypothetical protein.
  
     0.567
SHI83777.1
Iron complex outermembrane recepter protein.
  
     0.561
SHI52143.1
Hypothetical protein.
  
     0.547
SHJ99075.1
Acetolactate decarboxylase.
  
     0.499
SHI69340.1
Arginase family enzyme; Belongs to the arginase family.
  
 
 0.491
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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