STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI95140.1Diamine N-acetyltransferase. (174 aa)    
Predicted Functional Partners:
SHJ73217.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.874
SHI60375.1
Agmatinase; Belongs to the arginase family.
     
 0.856
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
  0.852
mltG
UPF0755 protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
       0.820
SHK00185.1
Glutamate synthase (NADH) large subunit.
   
 
 0.775
SHJ46603.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
    
  0.752
SHI87056.1
Protein N-acetyltransferase, RimJ/RimL family.
  
  
  0.675
SHI95086.1
Hypothetical protein.
 
     0.596
SHJ59223.1
Allosteric NADP-dependent malic enzyme.
    
 0.596
SHJ91712.1
Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component.
    
  0.595
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.