STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI96498.1C-terminal processing protease CtpA/Prc, contains a PDZ domain. (504 aa)    
Predicted Functional Partners:
SHI96431.1
Hypothetical protein.
 
 
   0.784
SHJ45771.1
Aspartate kinase.
    
  0.693
SHI96391.1
Protein of unknown function.
 
     0.610
SHI96315.1
Protein of unknown function.
 
     0.572
SHJ11992.1
Aspartate kinase.
    
  0.569
SHJ85299.1
Starch-binding associating with outer membrane.
  
  0.560
SHI96532.1
Peptidase family S41.
 
    
0.557
SHI96361.1
Protein of unknown function.
 
     0.537
SHI41566.1
Starch-binding associating with outer membrane.
  
  0.530
SHI96462.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.522
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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