Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHI46946.1 | SHI97196.1 | SAMN04488513_101383 | SAMN04488513_102435 | Lipoprotein-releasing system permease protein. | Transglycosylase SLT domain-containing protein. | 0.496 |
SHI49163.1 | SHI97196.1 | SAMN04488513_101453 | SAMN04488513_102435 | Protein of unknown function. | Transglycosylase SLT domain-containing protein. | 0.581 |
SHI49163.1 | SHJ45538.1 | SAMN04488513_101453 | SAMN04488513_1057 | Protein of unknown function. | Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.753 |
SHI49163.1 | SHJ57792.1 | SAMN04488513_101453 | SAMN04488513_10648 | Protein of unknown function. | Biopolymer transport protein ExbD. | 0.774 |
SHI49163.1 | SHJ57828.1 | SAMN04488513_101453 | SAMN04488513_10649 | Protein of unknown function. | Biopolymer transport protein ExbD. | 0.774 |
SHI49163.1 | SHJ59404.1 | SAMN04488513_101453 | SAMN04488513_10696 | Protein of unknown function. | Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.762 |
SHI68566.1 | SHI97196.1 | SAMN04488513_101990 | SAMN04488513_102435 | Penicillin-binding protein 2. | Transglycosylase SLT domain-containing protein. | 0.495 |
SHI97151.1 | SHI97196.1 | SAMN04488513_102434 | SAMN04488513_102435 | Cardiolipin synthase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol. | Transglycosylase SLT domain-containing protein. | 0.532 |
SHI97151.1 | SHI97231.1 | SAMN04488513_102434 | SAMN04488513_102436 | Cardiolipin synthase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol. | Hypothetical protein. | 0.470 |
SHI97196.1 | SHI46946.1 | SAMN04488513_102435 | SAMN04488513_101383 | Transglycosylase SLT domain-containing protein. | Lipoprotein-releasing system permease protein. | 0.496 |
SHI97196.1 | SHI49163.1 | SAMN04488513_102435 | SAMN04488513_101453 | Transglycosylase SLT domain-containing protein. | Protein of unknown function. | 0.581 |
SHI97196.1 | SHI68566.1 | SAMN04488513_102435 | SAMN04488513_101990 | Transglycosylase SLT domain-containing protein. | Penicillin-binding protein 2. | 0.495 |
SHI97196.1 | SHI97151.1 | SAMN04488513_102435 | SAMN04488513_102434 | Transglycosylase SLT domain-containing protein. | Cardiolipin synthase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol. | 0.532 |
SHI97196.1 | SHI97231.1 | SAMN04488513_102435 | SAMN04488513_102436 | Transglycosylase SLT domain-containing protein. | Hypothetical protein. | 0.670 |
SHI97196.1 | SHI97268.1 | SAMN04488513_102435 | SAMN04488513_102437 | Transglycosylase SLT domain-containing protein. | Hypothetical protein. | 0.540 |
SHI97196.1 | SHJ45538.1 | SAMN04488513_102435 | SAMN04488513_1057 | Transglycosylase SLT domain-containing protein. | Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.594 |
SHI97196.1 | SHJ57792.1 | SAMN04488513_102435 | SAMN04488513_10648 | Transglycosylase SLT domain-containing protein. | Biopolymer transport protein ExbD. | 0.596 |
SHI97196.1 | SHJ57828.1 | SAMN04488513_102435 | SAMN04488513_10649 | Transglycosylase SLT domain-containing protein. | Biopolymer transport protein ExbD. | 0.582 |
SHI97196.1 | SHJ59404.1 | SAMN04488513_102435 | SAMN04488513_10696 | Transglycosylase SLT domain-containing protein. | Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.626 |
SHI97231.1 | SHI97151.1 | SAMN04488513_102436 | SAMN04488513_102434 | Hypothetical protein. | Cardiolipin synthase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol. | 0.470 |
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