STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI99697.1Putative auto-transporter adhesin, head GIN domain. (243 aa)    
Predicted Functional Partners:
SHI99670.1
Phage shock protein C (PspC) family protein.
 
  
 0.737
SHJ84558.1
LysM repeat-containing protein.
  
 
   0.533
SHI99737.1
L-alanine-DL-glutamate epimerase.
       0.497
SHI99768.1
7-keto-8-aminopelargonate synthetase.
       0.497
SHJ74977.1
Hypothetical protein.
  
 
   0.486
SHI99604.1
Hypothetical protein.
 
    0.477
SHI99641.1
Transcriptional regulator, PadR family.
       0.466
SHI89299.1
Putative auto-transporter adhesin, head GIN domain.
 
     0.441
SHI60949.1
Pentapeptide repeat-containing protein.
    
   0.439
SHI64658.1
Hypothetical protein.
  
 
   0.439
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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